Index

C

correlation_embed() (in module nmf_models.plotting)

correlation_loadings() (in module nmf_models.plotting) correlation_plot() (in module nmf_models.plotting)

E

embed_plot() (in module nmf_models.plotting)

F

factor_biplot() (in module nmf_models.plotting)

fit() (intNMF method)

G

get_top_features() (in module nmf_models.utils)

I

intNMF (class in nmf_models.nmf_models_mod_updates)

InvalidMatType

L

load_multiome() (in module nmf_models.utils) log_tf_idf() (in module nmf_models.nmf_models_mod_updates) loss (intNMF attribute)

loss() (in module nmf_models.plotting) loss_atac (intNMF attribute) loss_rna (intNMF attribute)

M

module nmf_models nmf_models.nmf_models_mod_updates nmf_models.plotting nmf_models.utils

N

nmf_models module nmf_models.nmf_models_mod_updates module

nmf_models.plotting module nmf_models.utils module

P

phi_atac (intNMF attribute) phi_rna (intNMF attribute)

plot_weights_bar() (in module nmf_models.plotting) plot_weights_rank() (in module nmf_models.plotting) plot_weights_scatter() (in module nmf_models.plotting)

T

theta (intNMF attribute)

V

view_embed() (in module nmf_models.plotting)

view_loadings() (in module nmf_models.plotting)