nmf_models.plotting.embed_plot

embed_plot(nmf_model, TX=0, TY=1, labs=None, scale_x=1, scale_y=1, title=None, y_lab=None, x_lab=None)[source]

Plot nmf embedding.

Parameters:

  • nmf_model (intNMF) – intNMF model with embed to view (.fit has been run)

  • TX (int) – factor/topic for x-axishttp://localhost:8888

  • TY (int) – factor/topic for y-axis

  • labs (list) – cell labels used to colour plot. discrete or continuos determined by fraction of unique elements

  • scale_x (float) – value to divide x-axis values by

  • scale_y (float) – value to divide y-axis values by

  • title (str) – plot title, default None

  • y_lab (str) – y-axis label, default None

  • x_lab (str) – x-axis label, default None

Return type:

matplotlib ax