nmf_models.utils.get_top_features
- get_top_features(nmf_model, topics=None, n_features=1, modality='rna', mode='abs')[source]
Get the highest ranked features from selected topics.
- Parameters:
nmf_model (intNMF) – intNMF model with loadings to plot (.fit has been run)
topics (list[int], default None (all topics)) – list of topics to get top features for
n_features (int, default 1) – Number of features
modality (str, 'rna' | 'atac', default 'rna') – modality fro which to return features
mode (str, 'abs' | 'diff', default 'abs') – select features based on absolute value or diff with other topics average
- Return type: