nmf_models.plotting.plot_weights_rank

plot_weights_rank(nmf_model, factor, n_labs=5, modality='rna', select=None, title=None, ax=None)[source]

Rank plot of the feature weights.

Parameters:

  • nmf_model (intNMF) – intNMF model with loadings to rank (.fit has been run)

  • factor (int) – factor/topic to plot feature weights for

  • n_labs (int) – number of features to label

  • modality (str, 'rna' | 'atac') – select modality from which features are ranked.

  • select (list[str]) – list of additional features to label

  • title (str) – plot title, default None

  • ax (matplotlib ax) – matplotlib ax to plot on

Return type:

matplotlib ax