Tutorials

• Introduction Tutorial
  • run intNMF package
  • Integration with muon
  • intNMF plotting functions
    • View matrices
    • View correlations
    • NMF feature plots
      • Bi plots
      • Weight rankings
      • Weight scatter plots
      • weights bar charts
• Multiple examples (old)
  • Example 1 - anndata
    • Example plots to view the NMF matrices
    • Plots to view histograms of individual topics or whole matrices.
    • Using Scanpys plotting methods
  • Example 2 - 10x HDF5 data
  • Example 3 - 10x ‘dir’ data